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Introduction

The VIVO Harvester is a library of tools designed to read and transform data from external data sources and ingest it into VIVO or potentially any other triplestore or semantic platform. The library was originally developed by a team at the University of Florida during the 2009-2011 NIH Grant.

The VIVO Harvester is currently maintained on GitHub by John Fereira from Cornell as part of VIVO-related projects including AgriVIVO and USDA VIVO.  Other contributions to ongoing Harvester enhancements have been made by Alex Viggio through Symplectic, Ltd.

Development of the Harvester at first followed a monthly release cycle. Now a new version of the VIVO Harvester is released alongside each never major version of VIVO.  Use the links below to learn more about individual tools the harvester is comprised of, or read the Harvester User Guide to learn more about using the harvester.

Harvester Instructions

Harvester User Guide

Scheduling

Walkthrus for example scripts

JDBC Example Script

Pubmed Example Script

IP Example Script

Deployment

Video Walkthrus

Screencasts of example harvester runs: https://sourceforge.net/projects/vivo/files/VIVO%20Harvester/Demonstration/

Case Studies/Examples

University of Florida PubMed Harvest

University of Florida PeopleSoft Harvest

University of Florida Department of Sponsored Research Harvest

Class Documentation

Development Documentation

Milestones

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