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History

The Harvester began life as a specialized ETL tool meant to ease the process of data ingest into VIVO. It has transformed into a general semantic ETL tool.

Introduction

The VIVO Harvester is a library of tools designed to take data from external data sources and ingest it into VIVO. The library was originally developed at the University of Florida during the 2009-2011 NIH Grant. Development of the Harvester follows a monthly release cycle. New features are built in the first 2-3 weeks of the cycle, with testing and releasing occurring during the 3rd and 4th week of the cycle. Use the links below to learn more about individual tools the harvester is comprised of, or read the Harvester User Guide to learn more about using the harvester.

Harvester Overview

Typical harvest

Harvester Instructions

Harvester User Guide

Scheduling

Walkthrus for example scripts

JDBC Example Script

Pubmed Example Script

IP Example Script

Video Walkthrus

Screencasts of example harvester runs: https://sourceforge.net/projects/vivo/files/VIVO%20Harvester/Demonstration/

Case Studies/Examples

University of Florida PubMed Harvest

University of Florida PeopleSoft Harvest

University of Florida Department of Sponsored Research Harvest

Class Documentation

Development Documentation

Milestones

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