Thursday, July 12, 10 AM US Eastern Time
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Attendees
- Mike Conlon
- Marijane White
- Christian Hauschke
- Ralph O'Flinn
- Muhammad Javed
- Tatiana Walther
- Kitio Fofack
- Brian Lowe
- Violeta Ilik
- Damaris Murry
Agenda
- Updates
- from China
- Discussions with Mark Musen
- Discussions with Stefan Decker
- Other updates
- from China
- Use of XMLLiteral and VIVO-1528
- Priorities for the ontology
- Modules, for example clinical trials, identifiers
- Cleaning, for example, adding definitions, providing super Classes, removing/replacing singletons, DOI definition as URL
- Internationalization, labels (and annotations?) in multiple languages
- Adding new terms/modules, for example, humanities
- Improving modeling, for example vcard, academic degrees, organizations, relationships
- Alignments, for example schema.org
- Versioning: We should publish a release now and start to improve the ontology from there. Questions:
- SemVer?
- Review and release processes
- Documentation
- ... additional items here ...
Notes
- Updates:
- China
- Mike tries to get control about the entry in Bioportal: https://bioportal.bioontology.org/ontologies/VIVO
- Schema.org is not an ontology, more use in VIVO is appreciated.
Regarding use of XMLLiteral. vivo.owl currently has 220 datatype properties. They have ranges tabulated below:
Count Range 160 None 34 xsd:string 14 xsd:anyURI 4 xsd:dateTime 3 xsd:boolean 3 xsd:int 1 xsd:date Here's the query I ran (using robot on vivo.owl in the released version)
PREFIX owl: <http://www.w3.org/2002/07/owl#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> SELECT (count(DISTINCT ?s) AS ?nrange) ?r WHERE { ?s a owl:DatatypeProperty . OPTIONAL { ?s rdfs:label ?l } OPTIONAL { ?s rdfs:range ?r } } GROUP BY ?r ORDER BY DESC(?nrange)
- Following discussion the group recommends the use of rdf:HTML as range on datatype properties that require HTML editing. All other datatype property ranges (including no ranges) are edited using a plain text edit editor. It appears that 4 datatype properties (vivo:overview, vivo:teachingOverview, vivo:researchOverview) should have range specified as rdf:HTML.
- Priorities
In Progress or Review Ontology Issues
Open Ontology Issues