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The VIVO Harvester is a library of tools designed to read and transform data from external data sources and ingest it into VIVO or potentially any other triplestore or semantic platform. The library was originally developed by a team at the University of Florida during Harvester Team during the 2009-2011 NIH Grant.

The VIVO Harvester is currently maintained on GitHub by John Fereira from Cornell as part of VIVO-related projects including AgriVIVO and USDA VIVO.  Other contributions to ongoing Harvester enhancements have been made by Alex Viggio through Symplectic, Ltd.

Source

Architecture and flow

The VIVO Harvester is a collection of small Java tools which are meant to be strung together in various ways to create a harvest process that is custom-tailored to your needs and (importantly) repeatable. This architecture makes the Harvester extremely versatile, but at the same time presents a bit of a learning curve.

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