Match.java takes a model generated by Score and renames matches, creates links, or removes literals based on the associated scores.
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Short Option | Long Option | Parameter Value Map | Description | Required |
|---|---|---|---|---|
i | inputJena-config | CONFIG_FILE | inputJena JENA configuration filename | true |
I | inputOverride | override the JENA_PARAM of inputJena jena model config using VALUE | false | |
o | output-config | CONFIG_FILE | outputConfig JENA configuration filename | true |
V | vivoOverride | override the JENA_PARAM of vivoJena jena model config using VALUE | false | |
s | score-config | CONFIG_FILE | score data JENA configuration filename | true |
S | scoreOverride | override the JENA_PARAM of score jena model config using VALUE | false | |
t | threshold | THRESHOLD | match records with a score over THRESHOLD | true |
l | link | link the two matched entities together using INPUT_TO_VIVO_PREDICATE and INPUT_TO_VIVO_PREDICATE | false | |
r | rename |
| rename or remove the matched entity from scoring | false |
c | clear-type-and-literals |
| clear all rdf:type and literal values out of the nodes matched | false |
Usage
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//from the env file
Match="java $OPTS -Dprocess-task=Match org.vivoweb.harvester.score.Match"
//from the script file
SCOREINPUT="-i $H2MODEL -ImodelName=$MODELNAME -IdbUrl=$MODELDBURL -IcheckEmpty=$CHECKEMPTY"
SCOREDATA="-s $H2MODEL -SmodelName=$SCOREDATANAME -SdbUrl=$SCOREDATADBURL -ScheckEmpty=$CHECKEMPTY"
MATCHOUTPUT="-o $H2MODEL -OmodelName=$MATCHEDNAME -OdbUrl=$MATCHEDDBURL -OcheckEmpty=$CHECKEMPTY"
MATCHTHRESHOLD = 1.0
$Match $SCOREINPUT $SCOREDATA $MATCHOUTPUT -t $MATCHTHRESHOLD -r -c
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The match class runs a sparql query on the score data. This can help access the score data for other purposes.
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?sInput = Input URI
?sVivo = Vivo URI
PREFIX scoreValue: <http://vivoweb.org/harvester/scoreValue/>
SELECT DISTINCT ?sVivo ?sInput (sum(?weightValue) AS ?sum)
WHERE {
?s scoreValue:InputRes ?sInput .
?s scoreValue:VivoRes ?sVivo .
?s scoreValue:hasScoreValue ?value .
?value scoreValue:WeightedScore ?weightValue .
}
GROUP BY ?sVivo ?sInput
HAVING (?sum >= threshold )
ORDER BY ?sInput
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