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The Open VIVO task force is active, and looking for additional help in Graphics/UI, Java development and RDF generation and management. If you'd like to help, please contact Mike Conlon or Graham Triggs |
Context
This task force has completed its work. You can visit OpenVIVO at http://openvivo.org. Please get an ORCiD and join OpenVIVO! Please use OpenVIVO as a source of data for VIVO tool development. Please use OpenVIVO for evaluation purposes. Show OpenVIVO to your colleagues! |
Context
OpenVIVO was demonstrated Open VIVO will be a demonstration of VIVO at the Force11 Conference in Portland, April 17-19. The demonstration is expected to will run through at least the VIVO Conference in August. More detail can be found in the Overview on Google Docs.
Objectives
- Provide a hosted Open VIVO platform that anyone with an ORCiD can join
- Develop attribution ontology for use with Open VIVO
- Import content from GRID (orgs), CrossRef (journals), Dates, Concepts. Import data for attendees from Figshare. Import content for users from ORCID.
- Provide a capability for a user to enter a DOI and the contribution they made to the work, and have that work added to Open VIVO
- Export all the data nightly to GitHub under FAIR data principles for reuse by the community.
- Demonstrate the system and support its use throughout the demonstration period.
- Produce the OpenVIVO system in time for demonstration at Force16
- Promote the system at Force16 and beyond
- Identify desirable future features
- Identify sustainability model
Features
- Demonstration of a hosted VIVO that anyone can join
- Sign on via an ORCiD identifier and password
- Automatic ingest of publications from ORCiD
- Ingest of material from the Force16 collection at Figshare (extensible to any collection on Figshare)
- Real-time addition of publications to a faculty profile by specifying a DOI or PubMed ID
- Standard RDF for journals, dates, and organizations
- Use of FAST as a standard vocabulary for research areas
- Publication of Open VIVO data to GitHub
- Consumption of Open VIVO data in CTSA Search
- Demonstration of a controlled vocabulary for attribution and contribution to scholarly works
Many elements of Open VIVO will find their way into future releases of VIVO. Sign on procedures, RDF data, attribution ontology, interactive addition of works via DOI and others will be added to VIVO for all sites to use. An export utility is planned for extracted data from Open VIVO regarding a particular institution. Using this tool, local data stewards will be able to extract data from Open VIVO pertaining to their organization, and add it to their local VIVO.
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This is a community-driven project. Schedules are subject to change as people are available. Open VIVO is a demonstration schedule for first appearance at the Force16 conference in Portland, Sunday April 17-Tuesday April 19. To demonstrate Open VIVO at the conference, the schedule below is proposedhas been completed.
Requirements are in place. Additional features could be added if time and resources permit, and if the feature(s) are consistent with the nature and purpose of Open VIVO.
Items in Green are sub projects that proceed in parallel. items Items in Red are major deadlines. Other items are in Black.
Tasks | Duration | Start | End | Status/Notes | ||
Develop charter, requirements, resource feasibility, solicit participation, approval of steering, project infrastructure, launch sub projects | 3 weeks | 2016-01-24 | 2016-02-13 | All complete except infrastructure. Mike Conlon working on this. On track.Done. See https://goo.gl/ofspSz | ||
Domain name, infrastructure hosting, branding/theme, stand up platform, three tier build, branding | 4 weeks | 2016-02-02 | 2016-3-0613 | Domain openvivo.org obtained. Infrastructure provider identified. Graham Triggs working on this. On track. Done. See https://goo.gl/MWsVNv | ||
ORCiD authentication, Profile creation, ORCiD hook for DOI | 6 days | TBA | TBA | Jim Blake will work on this. On trackDone. | ||
RDF generation for Journals (CrossRef and NLM) | 4 weeks | 2016-02-13 | 2016-03-13 | |||
RDF generation for ) and Organizations (Grid) | 4 weeks | 2016-02-13 | 2016-03-13 | Muhammad Javed and Violeta Ilik will work with Mike Conlon on Journals. David Eichmann will work with Mike Conlon on Organizations. | Done. See http://github.com/openvivo/grid-rdf | |
Figshare Collection Figshare Ingest | 4 weeks | 2016-02-13 | 2016-03-13 | Done. See http://github.com/openvivo/figshare-rdf | ||
Create a standard set of date RDF (various precisions, all dates in a range) | 1 Week | 2016-03-10 | 2016-03-17 | Done. See http://github.com/openvivo/date-rdf Ted Lawless will work with Mike Conlon on this. | ||
Identify and represent attribution/contribution | 4 weeks | 2016-02-13 | 2016-03-13 | Melissa Haendel, Kristi Holmes, Violeta Ilik and Alexandre Rademaker will work on this.Done. See https://goo.gl/eoe48x | ||
Publication Ingest from CrossRef with Attribution from user-entered DOI | 5 weeks | 2016-02-07 | 2016-03-1213 | Done. See http://github.com/openvivo. | ||
Ingest attendees, attach to a conference entity | 1 week | 2016-04-11 | 2016-04-16 | Done. See http://github.com/openvivo/attendees-rdf Graham Triggs is working on this. Prompt, fetch, confirm working. On track. | ||
Full assembly – all features in place. Begin testing, begin remediation, begin data export | 1 week | 2016-0304-1302 | 2016-0304-19 | Tight coordination among team members needed here. | 09 | Done. See http://openvivo.org/data |
Modified self-edit for positions. Included in OpenVIVO. Links to GRIDRemediation or additional features | 2 weeks | 2016-03-20 | 2016-04-02 | If things need to be fixed, fix them. If things need to be smoothed, smooth them. If things can be added, add them. Done. See http://openvivo.org | ||
Harvest data from Open VIVO to CTSAsearch | 2 weeks | 2015-03-20 | 2015-04-02Dave Eichmann will work on this | Done. See http://research.icts.uiowa.edu/polyglot/ | ||
Final acceptance testing, refinement, communications, presentation materials | 2 weeks | 2015-04-03 | 2015-04-15 | Stop adding things. Keep fixing things. Keep smoothing things.Done. Flyer https://goo.gl/1H4XHR. Poster at Figshare: https://goo.gl/kynK53 | ||
Workshops and Visualizations Hackathon at Force 11 Conference | 1 day | 2016-04-17 | 2016-04-17 | Done. | ||
Additional Force11 demonstrations, continuous update of open VIVO from Figshare and ORCiD, continuous export of data to GitHub, continuous import of data to Iowa repositories and tools. | 2 days | 2016-04-18 | 2016-04-19 | Conference attendees: Mike Conlon, Melissa Haendel, Kristi Holmes, Violeta Ilik, Dave Eichmann |
Contributors
Mike Conlon task force lead, project manager, RDF production
Graham Triggs technical lead, platform, DOI ingest, hosting, platform support
Ted Lawless RDF production
Muhammad Javed RDF for journals
Dave Eichmann RDF for orgs, reuse of data in CTSAsearch
Alexandre Rademaker Ontology work
Melissa Haendel Ontology work
Kristi Holmes Attribution ontology
Jim Blake ORCiD sign on, profile creation, DOI from ORCiD
TBA Graphic design/UI
Meeting Times
Duraspace, mconlon@durapsace.org
Alex Rademaker IBM Brazil, arademaker@gmail.com
David Eichmann University of Iowa, david-eichmann@uiowa.edu
Graham Triggs Duraspace, grtriggs@duraspace.org
Melissa Haendel Oregon Health Sciences University haendel@ohsu.edu
Violeta Ilik Northwestern University ilik.violeta@gmail.com
John Serafin Northwestern University j-serafin@northwestern.edu
Jim Blake, Cornell University jeb228@cornell.edu
Kristi Holmes kristi.holmes@northwestern.edu
Muhammad Javed Cornell University mj495@cornell.edu
Paul Friedman Northwestern University p-friedman@northwestern.edu
Ted Lawless Thomson Reuters ted.lawless@thomsonreuters.com
Marijane White Oregon Health Sciences University whimar@ohsu.edu
Shahim Essaid Oregon Health Sciences University essaids@ohsu.edu
Matthew Brush Oregon Health Sciences University brushm@ohsu.edu
Simon Porter Digital Science s.porter@digital-science.com
Martin Szomszor Digital Science m.szomszor@digital-science.com
Karen Guzman karen.gutzman@northwestern.edu
Meeting Times
Every Tuesday at 1 PM eastern on WebExTBD
Communication Channels
The status elements above will be updated each week and via VIVO Updates
- Notes of meetings will appear below
- vivo-tech and vivo-community will be used to support project communication
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