Date

06 Aug 2024

Call-in Information

Time: 10:00 am, Eastern Daylight Time (New York), 4pm Central European Summer Time

To join the online meeting:

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Meeting ID: 843 7861 5572
Passcode: 556561
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Calendar invitation - ICS file

Slack

https://vivo-project.slack.com
- Self-register at: http://bit.ly/vivo-slack

Attendees

Indicating note-taker

Agenda

- VIVO documentation update
- VIVO ORCID grant
- VIVO authentication issue - https://github.com/vivo-project/VIVO/issues/3996
- VIVO - ElasticSearch integration - https://github.com/vivo-project/Vitro/pull/469
- Installation at Debian 12
  - package javax.xml.soap does not exist
- Solr docker upgrade - Ian Slater
- Summer mode
  - 2nd, 9th, 23rd of July, 6th, 20th, 27th of August

Notes

Draft notes in Google Docs

Task List

Previous Tasks

Dragan Ivanovic to contact Elvis regarding the issue with authentication
Dragan Ivanovic to try to help Jinu with the installation issue
Ian Slater will try to upgrade VIVO 1.14.0 to VIVO 1.15.0 and inform the team back in the case there is still some issue
Dragan Ivanovic to investigate the UMLS issue and provide an update on Thursday committers' meeting.
Bridget Almas to follow up with the Lyrasis hosting team regarding the Vivo demo site and report back. Dragan Ivanovic to investigate data which should be used in demo instance and to check how it might be part of docker.
Victor Gabriel Pereira to explore using Elastic Search instead of Solr for VIVO's search functionality.
Dragan Ivanovic to coordinate the VIVO 1.15.0 documentation update
Ivan Mrsulja to test the Elasticsearch integration with Vivo 1.15.0 using ElasticSearch version 7.0 and provide an update on the testing process in the PR description

Dragan Ivanovic to prepare 1.14.3 release
Ivan Mrsulja to continue working on integration of VIVO with the ElasticSearch engine

Georgy Litvinov to fix https://github.com/vivo-project/VIVO/issues/3987
Dragan Ivanovic to discuss with Georgy about upload of images issue
Bridget Almas to review Wilma responsive PR
Dragan Ivanovic to investigate GitHub - Zenodo integration (already in place - https://zenodo.org/account/settings/github/repository/vivo-project/VIVO
Dragan Ivanovic to discuss with Don Elsborg about VIVO - ElasticSearch integration
Dragan Ivanovic will prepared slides for presenting VIVO at the CRIS 2024 conference
Dragan Ivanovic will monitor call for ORCID project
Dragan Ivanovic will try to reproduce the issue by using VIVO 1.14.x release, to cherry pick the commit which is resolving the issue https://github.com/vivo-project/VIVO/issues/3934 and check whether it is resolving the issue reported by Diego
Diego Rivas will confirm whether it resolves the issue
Dragan Ivanovic will prepare VIVO 1.14.2 release candidate
Ivan Mrsulja will add screenshots of email notifications for the password reset
Dragan Ivanovic to contact native speakers to help in the validation of messages in https://github.com/vivo-project/Vitro/pull/421
Dragan Ivanovic to update pull request template
Dragan Ivanovic to draft contributing.md
Dragan Ivanovic to update Readme.md file
Dragan Ivanovic to review https://github.com/vivo-project/Vitro/pull/443, https://github.com/vivo-project/Vitro/pull/444, https://github.com/vivo-project/Vitro/pull/445
Ivan Mrsulja to complete I forgot my password PR by adding draft translations of email notifications messages into all VIVO supported languages
Dragan Ivanovic to invite Ian Sleter to join VIVO team and to review PR for docker improvements
Dragan Ivanovic to respond on Humberto email - https://groups.google.com/g/vivo-community/c/6K651KthQAk/m/WjSjP0ZXAQAJ?utm_medium=email&utm_source=footer
William Welling will create a PR for addressing docker issue https://github.com/vivo-project/VIVO/issues/3939
Dragan Ivanovic will coordinate writing extended abstract for CRIS 2024 conference
Dragan Ivanovic will review https://github.com/vivo-project/Vitro/pull/440
Georgy Litvinov to investigate further the reported issue about sorting. If the issue exist it will be probably a new ticket and new PR for fixing that, Miloš Popović will open a ticket if that is needed.
Georgy Litvinov to review I forgot my password PR
Dragan Ivanovic and Ivan Mrsulja to complete review for Hiding (organization) profile pages
Brian Lowe will respond on the Manuel Hidalgo email
Dragan Ivanovic will contact Benjamin or Matthias for German validation, Michel for French validation, and Anna for Spanish validation - https://github.com/vivo-project/Vitro/pull/431/files
Ivan Mrsulja will implement the suggestion to set the difficulty to easy by default - https://github.com/vivo-project/VIVO/issues/3918
William Welling to review https://github.com/vivo-project/Vitro/pull/434
Miloš Popović to improve Wilma theme to resolve issues reported by Georgy - https://github.com/vivo-project/VIVO/pull/3932
Benjamin Kampe to help in validation of German labels - https://github.com/vivo-project/Vitro/pull/431/files#diff-bb423927e0836a896cfcf4a59808797d6f8cae5e3404d98d1572ed80d270d28e and https://github.com/vivo-project/Vitro/pull/431/files#diff-6cc406bfdad29755775006f31ce273b41dcbe69026af82c4e002fc919a6ee125 and https://github.com/vivo-project/VIVO/pull/3928/files#diff-0183b2b90ba7554c506b18de36fc3229985ddd1b12ad06198c546f0cb5992a54
Dragan Ivanovic to organize writing wiki documentation for new features
Georgy Litvinov to continue working on https://github.com/vivo-project/Vitro/pull/433
Ivan Mrsulja to improve I forgot my password PR in accordance with discussion (sending notification to system administrator).
Miloš Popović to review the audit tool PR (https://github.com/vivo-project/Vitro/pull/390, https://github.com/vivo-project/VIVO/pull/3879)
Georgy Litvinov to review the CAPTCHA PR (https://github.com/vivo-project/Vitro/pull/427, https://github.com/vivo-project/VIVO/pull/3920)
Kshitij Sinha to test VIVO on his mac machine
Dragan Ivanovic to remind community about language validation in some PR
Miloš Popović will work on fixing the issue with Nemo theme

Miloš Popović will complete PR for making wilma theme responsive
Ivan Mrsulja will improve messages in the CAPTCHA PR and add refresh button
Ivan Mrsulja to improve I forgot my password PR in accordance with discussion
Internationalization of I forgot my password PR

Georgy Litvinov to review https://github.com/vivo-project/Vitro/pull/421
Miloš Popović to further investigate M1 mac issue (argon update approach)
Miloš Popović to align Responsive Wilma theme PR with new contributions on main branch (after merging Extended search PR)
Ivan Mrsulja to document I forgot my password at Editing Your Profile and a flag to toggle this option at Configuration Reference
Georgy Litvinov to document the Extended search at Using Search

Ivan Mrsulja to align implementation of "I forgot my password" PR in accordance with discussion - create a neutral message, return back link to contact form, investigate whether CAPTCHA can be used
Dragan Ivanovic to discuss with Georgy Litvinov and Miloš Popović whether bootstrap.min.js is needed or not in the new responsive wilma theme
Garrett Armstrong to share his solution about using Docker to overcome issue with Mac M1 chip and VIVO
Dragan Ivanovic to respond to the email https://groups.google.com/g/vivo-tech/c/3rSwC3ywXlI and request more details about environment (VIVO version) and maybe some logs.
Dragan Ivanovic to announce next week presentation of BrCRIS
Ivan Mrsulja and Miloš Popović to complete implementation of "I forgot my password" feature
All - to review PR assigned to them
Dragan Ivanovic to create a PR fixing the issue with CodeQL GitHub action - https://github.com/vivo-project/VIVO/issues/3902
- https://github.com/vivo-project/VIVO/pull/3903
Don Elsborg will continue testing new VIVO with different versions of Solr and report back about the result.

Michel Héon to share presentation slides with VIVO community via slack channel
Dragan Ivanovic to document publication claiming feature - Editing Your Profile#PositionsandPublications
Kshitij Sinha will inform Michael Bentz and other UF members about progress in resolving issue related to the long delay in logging in
Dragan Ivanovic will communicate further will Ceci and Rodrigo about csv import into the VIVO graph
Brian Lowe will complete https://github.com/vivo-project/Vitro/pull/397, Dragan Ivanovic and Georgy Litvinov will review
Brian Lowe will review https://github.com/vivo-project/Vitro/pull/395
Dragan Ivanovic will prepare RC once when all blocking issues are resolved
Dragan Ivanovic to discuss with VIVO committers whether we can improve VIVO WCAG compliance
Brian Lowe will work on implementation of https://github.com/vivo-project/VIVO/issues/3770
Dragan Ivanovic will increase priority of https://github.com/vivo-project/VIVO/issues/3858, and https://github.com/vivo-project/VIVO/issues/3859
Dragan Ivanovic will continue communication with Joseph about the issue with mass removing data via slack
Dragan Ivanovic to share results of discussion about using Docker images with Rodrigo via https://groups.google.com/g/vivo-tech/c/yAOHcsJg8ro (the problem might be that VIVO docker container is not seeing vivo-solr container, meaning it is a network mode issue)
Dragan Ivanovic to reorganize VIVO upgrade wiki pages - Upgrading VIVO
Maxim Prokopenko to open a ticket (bug) for Solr index directory mount with docker compose (https://github.com/vivo-project/VIVO/issues/3857)
All to think about priorities for further development of VIVO
Dragan Ivanovic to check whether PDFDocument class is needed at all (and itext dependency)
Dragan Ivanovic to open a ticket (github issue) for ingesting sample data memory problem
all
- to provide feedback on https://docs.google.com/document/d/1jIIr90vTpI4l5KZeM30f_gOc-TpmlgKol-2oOEaU2Is/edit?usp=sharing,
- consider participating in https://forms.gle/16QbRU62CmJCaeJp8
- check personal calendars for the next sprint (May 22nd - June 9th, 2023)
Dragan Ivanovic to announce publishing VIVO 1.14.0 RC2
someone to test RC2
- Ivan Mrsulja tested RC2
Dragan Ivanovic to create survey for collecting standard practice in VIVO deployment process

Dragan Ivanovic to add columns in the project board for Priority and Difficulty.
Sprint participants to read description of issues and think about their preferences.

Dragan Ivanovic will contact Lyrasis admins to get an account for https://vivo.lyrasis.org/
Dragan Ivanovic will fix issues with layout and French sample data and publication graph - https://github.com/vivo-project/VIVO/pull/3810
Georgy Litvinov will fix the issue with faux data properties with xml literal range - https://github.com/vivo-project/Vitro/pull/363
William Welling will review previously described issues
Dragan Ivanovic will work on specification of tasks for the next sprint - https://github.com/orgs/vivo-project/projects/5 and https://github.com/orgs/vivo-project/projects/6
Dragan Ivanovic to send a test email through contact form - https://vivo.lyrasis.org/contact/
William Welling to complete review/testing of https://github.com/vivo-project/VIVO/pull/3805 and to summarize results in the PRs comments
Dragan Ivanovic to review William's comments and check what should be fixed/resolved before merging of the the branch
- Georgy Litvinov to fix issues with Russian email templates
- Georgy Litvinov to fix issues with faux data properties
All to think about organization/improvements of sample data, Dragan Ivanovic to add an item in the next week agenda for discussion
Dragan Ivanovic in communication with Georgy Litvinov to write/update documentation for faux (data) properties
Dragan Ivanovic to review and merge
- https://github.com/vivo-project/Vitro/pull/360
- https://github.com/vivo-project/Vitro/pull/361

Brian Lowe to review https://github.com/vivo-project/VIVO/pull/3788 and https://github.com/vivo-project/Vitro/pull/341 preferably by end of the week (11/25/2022)
Brian Lowe to review https://github.com/vivo-project/Vitro/pull/347
Michel Héon to validate https://github.com/vivo-project/Vitro/pull/347 and test performance with remote Fuseki
Anyone to validate https://github.com/vivo-project/Vitro/pull/348 and https://github.com/vivo-project/VIVO/pull/3797 preferably by end of the week (11/25/2022) - description how it should be validated provided in the PR description
Benjamin Kampe to review https://github.com/vivo-project/Vitro/pull/349 and https://github.com/vivo-project/VIVO/pull/3795 preferably by end of the week (11/25/2022)
Dragan Ivanovic to create PR in cooperation with Michel Héon for merging ttl files (labels' translations) into Vitro/VIVO repositories
Dragan Ivanovic to ask Arif for more info on the reported issue - https://groups.google.com/g/vivo-tech/c/gmyQIMWbm_Y
Dragan Ivanovic to open a ticket for https://groups.google.com/g/vivo-tech/c/wDblxLmeTjs. Done, ticket available at https://github.com/vivo-project/VIVO/issues/3772
Dragan Ivanovic will redirect reporter of this issue https://github.com/vivo-community/vivo-docker2/issues/22 to https://github.com/vivo-project/VIVO#docker
All to analyze the issue reported in the slack (https://vivo-project.slack.com/archives/C8RL9L98A/p1663253504895989) and check whether we should open a GitHub issue and add to the i18n redesign project board - https://github.com/orgs/vivo-project/projects/4
Brian Lowe will respond on the email https://groups.google.com/g/vivo-tech/c/5AY9h15h4vc/m/OjqekVxlBgAJ?utm_medium=email&utm_source=footer&pli=1
All to consider participation in the sprint and register via https://forms.gle/qLi1PhRrrpvUrrYRA
Dragan Ivanovic to work on specification of tasks for the sprint - GitHub project board
Michel Héon to work on the translation messages ontology
Dragan Ivanovic will bring up with leadership group that we would like to set up task force for dynamic API
Dragan Ivanovic will create infrastructure for the next sprint (slack channel, GitHub project board, wiki page, GitHub branch, GitHub issues, etc.)
Michel Héon to work on the ontology for UI labels (in multiple languages)
All to think about dates for the next sprint
Dragan Ivanovic to resolve conflicts for https://github.com/vivo-project/Vitro/pull/311 and https://github.com/vivo-project/Vitro/pull/297
Dragan Ivanovic to write script for preparing a release candidate - started at https://github.com/chenejac/VIVO-release-publisher
All to test the release candidate - Release Testing - 1.13.0
Dragan Ivanovic to publish VIVO 1.13.0 release (if there is no reported issue till 1st of September)
Dragan Ivanovic to prepare presentation for demo meeting - 2022-07-07 - Dynamic API demo meeting
Dragan Ivanovic to send reminder for the demo meeting - 2022-07-07 - Dynamic API demo meeting
Dragan Ivanovic to open an issue for a reverse proxy (redirecting) - https://vivo-project.slack.com/archives/C8RL9L98A/p1651739159126489
- https://github.com/vivo-project/VIVO/issues/3698
Dragan Ivanovic to contact Andrew Wood for resolving the issue with registration for the Slack channel
All to consider participation in the sprint and if decide to participate to register for the sprint - link
Dragan Ivanovic to send a require to add in the Leadership group agenda a topic for discussing Copyright owner in License
All please help in filling this document - spreadsheet
Dragan Ivanovic to create a draft version of a Google Spreadsheet document with labeled columns representing requirements and to share with committers
Committers to review the structure of the document and to fill it with data for JS and CSS frameworks

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2024-08-06 - VIVO Development IG

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