Date

28 Sep 2023

Call-in Information

Time: 10:00 am, Eastern Time

• Join Zoom Meeting
  https://lyrasis.zoom.us/j/81398228834?pwd=SE0wdFN3NnFVbEhYVUhuM3BtQmVUQT09

  Meeting ID: 813 9822 8834
  Passcode: 728426

• calendar invitation - ics

Attendees

 Indicating note-taker

1. Dragan Ivanovic  
2. Brian Lowe 
3. Georgy Litvinov   
4. William Welling 

Agenda

1. GitHub Backup
   1. GitLab import feature for backup 
2. Migration from Pure to VIVO
   1. https://vivo-project.slack.com/archives/C8RL9L98A/p1696420525350379
3. ORCID global funding program
   1. https://info.orcid.org/global-participation-program/global-participation-fund/
4. Log4j vulnerability
   1. https://groups.google.com/g/vivo-tech/c/nB4eA580WIQ
5. Removing trash icon for some specific types
   1. https://vivo-project.slack.com/archives/C8RL9L98A/p1695991085638279
6. VIVO 1.15
   1. PRs
      1. https://github.com/vivo-project/VIVO/pulls
      2. https://github.com/vivo-project/Vitro/pulls

Notes

GitHub Backup

Dragan is in communication with Lyrasis system administrators and officers about running a self-managed GitLab instance for this purpose. There is the API for running import which will allow us to make a script for weekly or daily backup (implemented by mirroring using the import functionality). 

Migration from Pure to VIVO

Nick Veenstra would like to discuss this topic. He will probably be present in some of our Tuesday tech calls to provide us more information about the context. 

ORCID global funding program

There is a call for project proposals. https://info.orcid.org/global-participation-program/global-participation-fund/ 

Dragan will participate in the info webinar organized by ORCID to collect more information about the call. 

Log4j vulnerability

Dragan will open a GitHub issue

Removing trash icon for some specific types

Dragan will open a GitHub issue

VIVO 1.15

Dragan: Any help in reviewing PR is highly appreciated. Brian will try to find time to help in reviewing. He is especially interested in the extended search PR.

Draft notes on Google Drive

Actions

• Dragan Ivanovic will open a GitHub ticket for  Log4j vulnerability
  • https://github.com/vivo-project/VIVO/issues/3913
• Dragan Ivanovic will open a GitHub ticket for  Removing trash icon for some specific types
  • https://github.com/vivo-project/VIVO/issues/3914
• All will review assigned PRs

Previous actions 

• Dragan Ivanovic will further investigate mirroring GitHub repositories to a self-managed instance of a GitLab platform
• Georgy Litvinov will upgrade https://github.com/vivo-project/Vitro/pull/398
•  Dragan Ivanovic should investigate https://github.com/marketplace?category=backup-utilities
• Dragan Ivanovic to prepare VIVO 1.14.0 release
• Dragan Ivanovic to prepare release candidate 4
• Georgy Litvinov to align https://vivo.tib.eu/vivorc/ with release candidate 4
• Dragan Ivanovic to respond to slack messages
• Dragan Ivanovic will try to collect wiki pages where strategy, vision and roadmap for development of VIVO were discussed in the past
• Georgy Litvinov will try to address the issue https://github.com/vivo-project/VIVO/issues/3871
• Dragan Ivanovic will ask Michael to open a GitHub ticket for the issue about UF performance during login (https://vivo-project.slack.com/archives/C8RL9L98A/p1684174222986709), Brian Lowe and others can continue discussion about this issue once a ticket is open
• Dragan Ivanovic will ask Rodrigo to open a GitHub ticket for the issue about custom theme and VIVO Docker (https://vivo-project.slack.com/archives/C8RL9L98A/p1684962021101889), William Welling  and others can continue discussion about this issue once a ticket is open
• Brian Lowe to open a GitHub issue for index page exception
  • https://github.com/vivo-project/VIVO/issues/3867
  • add sample (minimal RDF to reproduce the issue)
• Miloš Popović or Ivan Mrsulja to review (https://github.com/vivo-project/VIVO/issues/3862)
  • https://github.com/vivo-project/VIVO/pull/3863
  • https://github.com/vivo-project/Vitro/pull/386
• Georgy Litvinov to review (https://github.com/vivo-project/VIVO/issues/3847)
  • https://github.com/vivo-project/Vitro/pull/383
• Review (https://github.com/vivo-project/VIVO/issues/3865)
  • https://github.com/vivo-project/VIVO/pull/3866
• Review (https://github.com/vivo-project/VIVO/issues/3864)
  • https://github.com/vivo-project/Vitro/pull/387
• Review (https://github.com/vivo-project/VIVO/issues/3858)
  • https://github.com/vivo-project/Vitro/pull/385
• Review (https://github.com/vivo-project/VIVO/issues/3859)
  • https://github.com/vivo-project/Vitro/pull/384
• Review (https://github.com/vivo-project/VIVO/issues/3855)
  • https://github.com/vivo-project/VIVO/pull/3861
• Review (https://github.com/vivo-project/VIVO/security/dependabot/3)
  • https://github.com/vivo-project/VIVO/pull/3853

• Brian Lowe and William Welling to review https://github.com/vivo-project/VIVO/pull/3853
• William Welling to review https://github.com/vivo-project/VIVO/pull/3861
• All to think how to organize scripts for VIVO (at the moment for dump and restore) - https://github.com/vivo-project/Vitro/pull/380

• Dragan Ivanovic to make consultation with the VIVO ontology group and Lyrasis system administrators about non-resolvable VIVO ontology links
• Committers to take part in the sprint PR review process
• Dragan Ivanovic to make a PR for fixing privileges for adding grant collaborators
• Brian Lowe to make a PR for fixing ordering of instances with multilingual properties
• Georgy Litvinov will investigate the problem of searching instances with multilingual properties
• Ralph O'Flinn to help with Preparing Documentation for Release by coping space VIVO 1.12.x Documentation to the space VIVO 1.13.x Documentation (or to grant Dragan Ivanovic permissions to do that)
• Dragan Ivanovic to work on documenting new features for VIVO 1.13.x Documentation
• Dragan Ivanovic to create the third one google form for reporting the testing results, that form should be used for testing new features introduced in VIVO 1.13.0
  • New Features: https://docs.google.com/forms/d/19FMslvvSzg_FK-Wmxg4t7EOP2UDft4FVdQvM4-2IO50/edit?usp=sharing
• Everyone to review https://docs.google.com/forms/d/13W2vynR6OmavoV2Px_kJ-k-dlQDv3ERWG0PnXX7ekQA/edit?usp=sharing and https://docs.google.com/forms/d/1dks3b3sJsmM7Q33bwHW_1iVem5VRjg3fqpx8UTFKIfI/edit?usp=sharing
  • and to review https://docs.google.com/forms/d/19FMslvvSzg_FK-Wmxg4t7EOP2UDft4FVdQvM4-2IO50/edit?usp=sharing
• Brian Lowe to work on removing spring dependencies (https://github.com/vivo-project/VIVO/issues/3686)
• Georgy Litvinov to work on PR for merging back a lost fix he noticed
• Everyone to review spreadsheet for defining requirements for JS and CSS framework selection - https://docs.google.com/spreadsheets/d/1p-86FdqQR2SpFIsK5Xa-k6Dgm5ORg6Lrc7eeOEetm8g/edit?usp=sharing

• Benjamin Gross to review https://github.com/vivo-project/Vitro/pull/251
• Dragan Ivanovic to review https://github.com/vivo-project/Vitro/pull/251
• Georgy Litvinov to fix the issue with GitHub action https://github.com/vivo-project/Vitro/pull/269
• Ralph O'Flinn to review https://github.com/vivo-project/Vitro/pull/269
• William Welling to review https://github.com/vivo-project/Vitro/pull/269
• Georgy Litvinov to update pom versions in https://github.com/vivo-project/VIVO-languages/pull/104 and https://github.com/vivo-project/Vitro-languages/pull/54
• Dragan Ivanovic to review and merge https://github.com/vivo-project/VIVO-languages/pull/104 and https://github.com/vivo-project/Vitro-languages/pull/54
• Georgy Litvinov to review https://github.com/vivo-project/VIVO/pull/3613
• Dragan Ivanovic to review https://github.com/vivo-project/Vitro/pull/240 
• Brian Lowe to review https://github.com/vivo-project/Vitro/pull/240
• Ralph O'Flinn to publish orcid-api-client 0.6.4 and update version of this library at https://github.com/vivo-project/VIVO/blob/main/api/pom.xml#L62

• Dragan Ivanovic to create announcement for the demo meeting and to spread it
• Dragan Ivanovic to reorganize code of https://github.com/vivo-project/Vitro/pull/287 and to get rid of enumerations for data types 
• Dragan Ivanovic to investigate organizational (management) aspects of DSpace community and to prepare discussion for the next meeting what might be adopted from there (GitHub actions, labels for issues, template for issue, template for PR)
• William Welling Georgy Litvinov to review sprint PRs (there should be three PRs)
• Brian Lowe to review N3Template operation PR (https://github.com/vivo-project/Vitro/pull/286)
• Georgy Litvinov to review/test https://github.com/vivo-project/orcid-api-client/pull/12
• Ralph O'Flinn to merge https://github.com/vivo-project/orcid-api-client/pull/12 and publish orcid-api-client 0.6.4
• Georgy Litvinov to complete https://github.com/vivo-project/Vitro/pull/251

• Ralph O'Flinn to merge https://github.com/vivo-project/VIVO/pull/3611, after that Georgy Litvinov will create a branch for the sprint and move the code from his fork to there
• Ralph O'Flinn to resolve missing i18n directory issue in VIVO 1.12.2 release
• Georgy Litvinov to work on specification for Dynamic API, Dragan Ivanovic to help Georgy on request
• Ralph O'Flinn to resolve missing i18n directory issue in VIVO 1.12.2 release
• Dragan Ivanovic to find some examples for citation of a GitHub repositories (https://github.com/vivo-project/VIVO/pull/247) 
• Georgy Litvinov to contact Tatiana Walther for reviewing https://github.com/vivo-project/VIVO-languages/pull/104 and https://github.com/vivo-project/Vitro-languages/pull/54
• Benjamin Gross to review https://github.com/vivo-project/VIVO/pull/250, https://github.com/vivo-project/Vitro/pull/251, and https://github.com/vivo-project/Vitro-languages/pull/56
• Brian Lowe to review https://github.com/vivo-project/Vitro/pull/213, https://github.com/vivo-project/Vitro-languages/pull/44, https://github.com/vivo-project/Vitro/pull/240, and https://github.com/vivo-project/VIVO-languages/pull/103
• William Welling to review https://github.com/vivo-project/Vitro/pull/241
• Huda Khan to review https://github.com/vivo-project/VIVO/pull/247