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- Prepare installation, see above
Empty MySQL database
Code Block language bash mysql -u root -p mysql> drop database vitrodb mysql> CREATE DATABASE vitrodb CHARACTER SET utf8; mysql> GRANT ALL ON vitrodb.* TO 'vitrodbUsername'@'localhost' IDENTIFIED BY 'vitrodbPassword';
Remove application data
Code Block language bash rm -rf ${VIVO_HOME}/tdbModels/* rm -rf ${VIVO_HOME}/solr/data/*Start Tomcat
Code Block language bash sudo service tomcat8 restart
UI Tests
| Test | Platform | Tested by | Success? | Notes | |
|---|---|---|---|---|---|
| 1 | Smoke tests do not produce error (warning about email server is OK) | Mac Linux Windows |
| ||
| 2 | Home page displays correctly | Mac Linux |
| Wait for indexing, refresh. | |
| 3 | Log in as admin | Mac Linux |
| ||
| 4 | Site Admin page displays correctly | Mac Linux |
| Shows startup status warning re email | |
| 5 | Each function on site admin display correctly | Mac |
| All 24 links (including Data Input Pull down) display normally. Ontology list All looks good | |
| 6 | Site Admin - Add Individual of this class: Faculty Member (People) Project (Activities) Course (Courses) Academic Article (Research) Presentation (Events) Academic Department (Organizations) Populated Place (Locations) | Mac Linux |
|
| Works as designed | |||||
| 7 | Check required fields in creating classes | Mac | 
| Not sure what this test is? VIVO only requires labels as individuals are created. | |
| 8 | Check menu entries (Home, People, Organizations, Events, Capability Map) | Mac Linux |
| Works as designed. | |
| 9 | Check Person display (logged out, logged in) | Mac |
| Works as designed. | |
| 10 | Add values to all Person attributes | Mac |
| All is a heavy lift. 64 attributes accessible from the person page, some of which lead to entities (publications, positions, etc)) each with their own attributes. Recommended: Add photo, overview, URL, research areas, position. Each exercises different functionality. | |
| 11 | Add research areas using vocabulary services | Mac | Unable to complete | UMLS service requires registration key. See Release Notes. Unclear where this key would go. Other services respond as expected. | |
| 12 | Check tabs on Person display (overview, publications, contact, etc.) | Mac |
| Works as designed. | |
| 13 | Add new publication to person (check required fields) | Mac |
| Works as designed. | |
| 14 | Check publication sparkline | Mac |
| The Information icon ^^^ confirmed. This may have been broken for awhile. The link doesn't work on Scholars@Duke either. | |
| 15 | Check manage publications (hide / show publications) | Mac |
| Works as designed. (I don't think I'd ever tried this. Works well.) | |
| 16 | Check Publication view | Mac |
| Works as designed. | |
| 17 | Check AltMetric badge (e.g. doi: 10.1038/nrmicro2331) | Mac |
| Poor UI experience. I copied in the link, which copied in the HTML tagging, which led to showing the HTML tagging in the display. The edit form is open ended HTML, should be plain text. Should indicate what form of DOI is expected , or should accept with or without http:// without without "doi". | |
| 18 | Add author(s) to publication | Mac |
| Works as designed. | |
| 19 | Check Person has co-author network | Mac |
| Works as designed. | |
| 20 | Check co-author network display | Mac |
| Works as designed | |
| 21 | Add grants to Person | Mac |
| Works as designed | |
| 22 | Add co-investigators to grants | Mac |
| Works as designed | |
| 23 | Check Person has co-investigator network | Mac |
| Works as designed | |
| 24 | Check co-investigator network display | Mac |
| Works as designed | |
| 25 | Load Sample Data | Mac |
| sample-data.n3 loaded from https://github.com/vivo-project/sample-data/blob/master/sample-data.n3 | |
| 26 | Check Capability Map | Mac |
| Works as designed. Need more sample data with more concepts for more extensive tests. | |
| 27 | Check Map of Science | Mac | Unable to complete | Testing requires google maps key configured in runtime.properties. | |
| 28 | Check Temporal Graph | Mac |
| Works as designed | |
| 29 | Search for "Derrida" | Mac |
| Works as designed | |
| 30 | Check index page | Mac |
| Works as designed | |
| 31 | Create self editor login associated with profile | Mac |
| Works as designed. Updated documentation to describe how this is done. See Creating and Managing User Accounts#AssociatingUserAccountswithProfilePages | |
| 32 | Log in as self editor. Verify can edit self, cannot edit others. | Mac |
| Works as designed. | |
| 33 | Add and confirm an ORCiD | Mac | Unable to complete | ORCiD API configuration requires clientId and clientPassword and public VIVO. See Activating the ORCID integration | |
| 34 | Create editor and assign proxy editing | Mac Windows |
 |
| Works as designed. Created user account with editor role and assigned proxy editing. Also switched to self-editor role. | ||||
| 35 | Log in as proxy editor. Verify can edit proxied profile, cannot edit others. | Mac Windows |
| works as designed. When logged in as self-editor designated as a proxy editor, I can only edit the proxied profile and not a different profile. When logged in as editor (i.e. the editor role which is different from self-editor), I can edit the proxied profile but also other profiles. (Hence the question mark - I'm unsure whether this is desired behavior or not) | |
| 36 | Check TPF endpoint | Mac Windows |
| Works as designed. 45,279 triples with VIVO data, sample data, and some manually entered test data. Design needs work. /tpf/core displayed triples and enabled triple pattern matching by subject,predicate, or object. (43,173 triples in total) | |
| 37 | Run a SPARQL query | Mac Windows |
| Chrome: Screen appeared to be showing all prefixes, then flashed and was replaced by screen showing just five prefixes. Query ran fine, but prefixes should appear in the default SPARQL query window. See SPARQL Prefixes missing 2018-06-03 14.50.25.png May be user error – perhaps caching this screen? I removed all cache and retried, but behavior remained. Safari: works as designed On Windows, tested in Firefox with same query as in screenshot above: "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> SELECT ?s ?o WHERE {?s rdfs:subClassOf ?o .}" and items were returned. In Chrome, ran default query that shows up when you first to the Sparql query page (if you haven't been there in that browser) and that also ran successfully. |
API Tests (reference: VIVO APIs)
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