...
- Dragan Ivanovic
- Brian Lowe
- Georgy Litvinov
- Ivan Mrsulja
- Miloš Popović
- Santhosh Anand Ramia
- Bridget Almas
- William Welling
- Washington Luís Ribeiro de Carvalho Segundo
- Victor Gabriel Pereira
- Vivian Silva
Agenda
- Tom Misilo
- Ian Slater
Agenda
- VIVO 1.15.0 Release Announcement
- VIVO documentation update
- VIVO ORCID grant
- VIVO authentication issue - VIVO - ElasticSearch integrationIvan Mršulja - https://github.com/vivo-project/VitroVIVO/pullissues/4693996
- ElasticSearch 7 and 8
- OpenSearch
- TLS + basic authentication
- properties
- reviewers - Dragan, BrCRIS team?, one more committer
- VIVO 1.15.0 - Release Testing - 1.15.0
- Five people tested new features - response summary
- 1 of those 5 didn't manage to test hide faux object property successfully. Taking into account that 4 others testers did that, I think this feature is working (I have also tested that), but we should give our best in documenting how this should be done
- 2 of 5 testers complained on message when they are providing a non-existing user email in I forgot my password page. The message is that an email has been sent, and it is desired feature. Initially, Ivan implemented two type of messages, no user account associated with that email and an email has been sent, but then we concluded in this way we are revealing existing account of a VIVO instance.
- Three persons tested standard features - response summary
- Add research areas using vocabulary services for UMLS is not working. It might be that API has been changed, I think this is not a blocker for VIVO 1.15.0. I will open a ticket for this issue.
- Visualizations issues
- Map of Science
- google maps should be replaced with open street map
- limited list of journals
- Capability map
- a lot of debug messages in the console
- Publication sparkline
- last 10 full years (2014-2023, no publications from 2024)
- show numbers even when publications are hidden (is this bug or feature)
- Map of Science
- Five people tested new features - response summary
- Software instances in VIVO
- VIVO demo site Summer mode
- VIVO - ElasticSearch integration - https://github.com/vivo-project/Vitro/pull/469
- Installation at Debian 12
- package javax.xml.soap does not exist
- Solr docker upgrade - Ian Slater
- Summer mode
- 2nd, 9th, 23rd of July, 6th, 20th, 27th of August
Notes
VIVO 1.15.0
Dragan discussed the feedback from the test phase, highlighting an issue with the UMLS vocabulary and the need for additional configuration. He also shared that he had prepared a release after resolving the issue (VIVO 1.15.0 Release Announcement) and that there were no known bugs at the time.
VIVO documentation update
Dragan worked on updating wiki documentation and adding new wiki pages for new features introduced in VIVO 1.15.0
https://wiki.lyrasis.org/display/VIVODOC115x/Using+Search
https://wiki.lyrasis.org/display/VIVODOC115x/Authorization
https://wiki.lyrasis.org/display/VIVODOC115x/Editing+Your+Account
https://wiki.lyrasis.org/display/VIVODOC115x/The+VIVO+audit+module
https://wiki.lyrasis.org/display/VIVODOC115x/Private+individual+pages
VIVO ORCID grant
Dragan informed the team about the results of the review process for the VIVO-ORCID integration proposal. Unfortunately, the project has been rejected to be funded, although it got quite a high score (55 out of 56). It is not so clear at the moment what should be improved in the next call for funding. Leadership group should discuss whether we should apply again or not.
VIVO authentication issue
A GitHub ticket has been opened - https://github.com/vivo-project/VIVO/issues/3996
Brian tried to help, but the issue has not yet been resolved. Dragan can try to invite Elvis (the issue reporter) to join the next call.
VIVO - ElasticSearch integration
The pull request has been created, but the review process has not been started - https://github.com/vivo-project/Vitro/pull/469
Probably, the more progress might be after the summer break.
Installation at Debian 12
Dragan is in communication with Jinu (the reporter) and will try to help in the installation.
VIVO and Solr docker upgrade
Ian Slater reported the issue. He is trying to migrate VIVO 1.14 to VIVO 1.15. He tried to migrate data and Solr index. Dragan thinks it is not needed to migrate Solr index, it is enough to migrate data which not require any additional action if the same VIVO_HOME is used in which TDB subdirectories contain data, and after running the new VIVO to log in as system administrator and run reindex (Site admin in the main menu).
Summer mode
We will continue organizing meetings biweekly till August 20th. Plan for meetings:
- 2nd, 9th, 23rd of July, 6th, 20th, 27th of August
...
- of August
Task List
- Dragan Ivanovic to contact Elvis regarding the issue with authentication
- Dragan Ivanovic to try to help Jinu with the installation issue
- Ian Slater will try to upgrade VIVO 1.14.0 to VIVO 1.15.0 and inform the team back in the case there is still some issue
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Previous Tasks
- Dragan Ivanovic to investigate the UMLS issue and provide an update on Thursday committers' meeting.
- Bridget Almas to follow up with the Lyrasis hosting team regarding the Vivo demo site and report back. Dragan Ivanovic to investigate data which should be used in demo instance and to check how it might be part of docker.
- Victor Gabriel Pereira to explore using Elastic Search instead of Solr for VIVO's search functionality.
- Dragan Ivanovic to coordinate the VIVO 1.15.0 documentation update
- Ivan Mrsulja to test the Elasticsearch integration with Vivo 1.15.0 using ElasticSearch version 7.0 and provide an update on the testing process in the PR description
- Dragan Ivanovic to discuss with the Lyrasis team the potential for having separate demo and testing sites for VIVO
- Dragan Ivanovic to prepare 1.14.3 release
- Ivan Mrsulja to continue working on integration of VIVO with the ElasticSearch engine
...