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Homework: Evaluation, what has been changed, what should be removed, what should be updated, building the VCARD ontology module file (Add/Retract).
Team: Tatiana Walther LEAD (TIB), Muhammad Javed (Cornell), Mike Conlon Co-LEAD (VIVO)
DELIVERABLES:
A file that contains list of VCARD entities that are used in vivo software but with a second column, specifying if the entity is current, changed or is deprecated (do not exist) in the current VCARD ontology. (current/deprecated/changed).
A new model to substitute the changed or deprecated VCARD terms.
A file that contains vcard graph that should be removed from vivo.owl
A file that contains vcard graph that should be added in vivo.owl.
"SPARQL Construct Query" to find existing triples and to replace with new.
Comments:
Created a file vcard.owl which I have extracted out of vivo.owl by means of robot. Then I've made the necessary changes: *1*. I've changed the URIs if necessary, *2*. I've modified datatype properties to object properties if it was required, *3*. I removed deprecated properties and classes. I have substituted the removed classes with rdfs:Resource in range assignments of affected properties. 4. I've added the owl:equivalentProperty axiome where it was required according to the spec. All of these changes are in the vcard_changed.owl. Both of the files as well as a vcard_diff.txt where all the differences are enumerated are in the Google Drive folder (https://drive.google.com/drive/folders/1Q6ZgmxyF0wDDgvNt0zm8OOgQfAud4ydM) I have also tried to make a new vivo.owl with the help of merge / unmerge functions of robot, but not all of the deprecated things could be removed this way. So, I need to figure out, how to do this with robot. Of course, it would be no problem to do it manually. I'm not that experienced with robot yet.
Preparation of ontology modules for the candidate ontologies/entities to be deleted. (Homework)
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