Scanning Scopus for additional publications in profiles

To import new publications from scopus, run the following script: import-publications scopus

where:

import-publications is the name of the script

scopus the name of the external service from which we want to import

The additional parameter -l (limit) allow to set a limit of call performed to the external provider to retrieve the publications. The items are extracted sorted by the metadata cris.lastimport.<provider>, in which is stored the date of the last publications import.

The script applies the following steps to perform the import:

performs a global search to retrieve all the items of type Person that have a metadata person.identifier.scopus-author-id set.
taking one item at a time - extracts the metadata value from metadata person.identifier.scopus-author-id, with these value it constructs the query to be sent to the external Scopus service which in turn returns the document containing records.

a generic response from Scopus containing 3 records can be:

<?xml version="1.0" encoding="UTF-8"?>

<search-results xmlns="http://www.w3.org/2005/Atom" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:opensearch="http://a9.com/-/spec/opensearch/1.1/" xmlns:prism="http://prismstandard.org/namespaces/basic/2.0/" xmlns:atom="http://www.w3.org/2005/Atom">

<opensearch:totalResults>3</opensearch:totalResults>

<opensearch:startIndex>0</opensearch:startIndex>

<opensearch:itemsPerPage>3</opensearch:itemsPerPage>

<opensearch:Query role="request" searchTerms="(misha boychuk)" startPage="0"/>

<entry>

<prism:url>https://api.elsevier.com/content/abstract/scopus_id/85056894828</prism:url>

<dc:identifier>SCOPUS_ID:85056894828</dc:identifier>

<dc:title>Moss flora of Zeysky State Nature Reserve (Tukuringra Range, Amur Province, Russia)</dc:title>

<dc:creator>Dudov S.</dc:creator>

<prism:publicationName>Botanica Pacifica</prism:publicationName>

<prism:issn>22264701</prism:issn>

<prism:eIssn>24103713</prism:eIssn>

<prism:volume>7</prism:volume>

<prism:issueIdentifier>2</prism:issueIdentifier>

<prism:pageRange>83-104</prism:pageRange>

<prism:coverDate>2018-11-01</prism:coverDate>

<prism:coverDisplayDate>1 November 2018</prism:coverDisplayDate>

<prism:doi>10.17581/bp.2018.07204</prism:doi>

<dc:description>© Botanical Garden-Institute FEB RAS. 2018. An annotated list of the moss flora of Zeysky Nature Reserve is presented. It includes 310 species, with 140 species newly recorded for the reserve and 25 species new for Amur Province, including two species, Hondaella caperata and Hyophila involuta from the Red Data Book of Russian Federation. Other interesting records include recently described species (Amphidium asiaticum, Hedwigia kuzenevae, Sphagnum mirum), species on the western border of their distribution (Cryphaea amurensis, Dicranum pacificum, Hondaella caperata, Leucodon coreensis and Stereodon calcicola), on the southern edge of its distribution (Psilopilum cavifolium) and rare species with scattered localities in the southern Far East (Hyophila involuta, Seligeria donniana). A comparison with other moss floras in Asian Russia of about the same area indicates that the moss flora of Zeisky Reserve is more similar to other floras of the Amur River basin and also to Transbaicalian floras, rather than to the floras of Primorsky Territory, as the latter is much more enriched by East Asian flora elements.</dc:description>

<citedby-count>1</citedby-count>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60110534</affiliation-url>

<affilname>Tsitsin Main Botanical Garden, Russian Academy of Sciences</affilname>

<affiliation-city>Moscow</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60007457</affiliation-url>

<affilname>Lomonosov Moscow State University</affilname>

<affiliation-city>Moscow</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/116497163</affiliation-url>

<affilname>Zeya State Nature Reserve</affilname>

<affiliation-city/>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<prism:aggregationType>Journal</prism:aggregationType>

<subtypeDescription>Article</subtypeDescription>

<author-count limit="100" total="5">5</author-count>

<author-url>https://api.elsevier.com/content/author/author_id/57189892516</author-url>

<authname>Dudov S.</authname>

<surname>Dudov</surname>

<given-name>Sergey V.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/54401367100</author-url>

<authname>Kozhin M.</authname>

<surname>Kozhin</surname>

<given-name>Mikhail N.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/55856047600</author-url>

<authname>Fedosov V.</authname>

<surname>Fedosov</surname>

<given-name>Vladimir E.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/7003301657</author-url>

<authname>Ignatova E.</authname>

<surname>Ignatova</surname>

<given-name>Elena A.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/6603847397</author-url>

<authname>Ignatov M.</authname>

<surname>Ignatov</surname>

<given-name>Michael S.</given-name>

</author>

<source-id>21100806944</source-id>

<fund-acr>RSF</fund-acr>

<fund-no>181400121</fund-no>

<fund-sponsor>Russian Science Foundation</fund-sponsor>

<value>publisherfree2read</value>

</freetoread>

<value>All Open Access</value>

<value>Bronze</value>

</freetoreadLabel>

</entry>

<entry>

<prism:url>https://api.elsevier.com/content/abstract/scopus_id/85056898644</prism:url>

<dc:identifier>SCOPUS_ID:85056898644</dc:identifier>

<dc:title>Mosses of the southern Russian Far East, an annotated check-list</dc:title>

<dc:creator>Cherdantseva V.</dc:creator>

<prism:publicationName>Botanica Pacifica</prism:publicationName>

<prism:issn>22264701</prism:issn>

<prism:eIssn>24103713</prism:eIssn>

<prism:volume>7</prism:volume>

<prism:issueIdentifier>2</prism:issueIdentifier>

<prism:pageRange>53-81</prism:pageRange>

<prism:coverDate>2018-11-01</prism:coverDate>

<prism:coverDisplayDate>1 November 2018</prism:coverDisplayDate>

<prism:doi>10.17581/bp.2018.07206</prism:doi>

<dc:description>© Botanical Garden-Institute FEB RAS. 2018. The check-list of mosses of the southern part of the Russian Far East includes 816 species and 10 infraspecific taxa with references on their distribution in seven floristic regions within Primorsky and Khabarovsky Territories, Amurskaya and Sakhlinskaya Provinces and Evreiskaya Autonomous District. Seventy one species are excluded in the course of the check-list compilation, and 59 are commented as doubtful and erroneously reported from some of the Far Eastern regions, while 8 of them doubtful for the southern part of Russian Far East in general.</dc:description>

<citedby-count>7</citedby-count>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60110534</affiliation-url>

<affilname>Tsitsin Main Botanical Garden, Russian Academy of Sciences</affilname>

<affiliation-city>Moscow</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60110166</affiliation-url>

<affilname>Botanical Garden-Institute FEB RAS</affilname>

<affiliation-city>Vladivostok</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60103842</affiliation-url>

<affilname>Central Siberian Botanical Garden, SB RAS</affilname>

<affiliation-city>Novosibirsk</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60007457</affiliation-url>

<affilname>Lomonosov Moscow State University</affilname>

<affiliation-city>Moscow</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<prism:aggregationType>Journal</prism:aggregationType>

<subtypeDescription>Article</subtypeDescription>

<author-count limit="100" total="7">7</author-count>

<author-url>https://api.elsevier.com/content/author/author_id/6504776522</author-url>

<authname>Cherdantseva V.</authname>

<surname>Cherdantseva</surname>

<given-name>Valentina Ya</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/57193766939</author-url>

<authname>Pisarenko O.</authname>

<surname>Pisarenko</surname>

<given-name>Olga Yu</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/6603847397</author-url>

<authname>Ignatov M.</authname>

<surname>Ignatov</surname>

<given-name>Michael S.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/7003301657</author-url>

<authname>Ignatova E.</authname>

<surname>Ignatova</surname>

<given-name>Elena A.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/55856047600</author-url>

<authname>Fedosov V.</authname>

<surname>Fedosov</surname>

<given-name>Vladimir E.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/57189892516</author-url>

<authname>Dudov S.</authname>

<surname>Dudov</surname>

<given-name>Sergey V.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/57201079804</author-url>

<authname>Bakalin V.</authname>

<surname>Bakalin</surname>

<given-name>Vadim A.</given-name>

</author>

<source-id>21100806944</source-id>

<fund-acr>RSF</fund-acr>

<fund-no>18-14-00121</fund-no>

<fund-sponsor>Russian Science Foundation</fund-sponsor>

<value>publisherfree2read</value>

</freetoread>

<value>All Open Access</value>

<value>Bronze</value>

</freetoreadLabel>

</entry>

<entry>

<prism:url>https://api.elsevier.com/content/abstract/scopus_id/85030554178</prism:url>

<dc:identifier>SCOPUS_ID:85030554178</dc:identifier>

<dc:title>A revision of the genus seligeria (Seligeriaceae, bryophyta) in russia inferred from molecular data</dc:title>

<dc:creator>Fedosov V.E.</dc:creator>

<prism:publicationName>Phytotaxa</prism:publicationName>

<prism:issn>11793155</prism:issn>

<prism:eIssn>11793163</prism:eIssn>

<prism:volume>323</prism:volume>

<prism:issueIdentifier>1</prism:issueIdentifier>

<prism:pageRange>27-50</prism:pageRange>

<prism:coverDate>2017-09-26</prism:coverDate>

<prism:coverDisplayDate>26 September 2017</prism:coverDisplayDate>

<prism:doi>10.11646/phytotaxa.323.1.2</prism:doi>

<dc:description>© 2017 Magnolia Press. The genus Seligeria is revised based on morphological and DNA sequence data of nuclear ITS and chloroplastic trnL-F. Fifteen species from most infrageneric units of the genus are recovered in two well supported phylogenetic clusters that are also distinctive in morphology. The clade with the type species of the genus, S. pusilla, includes also S. donniana, S. brevifolia, S. calcarea, S. patula, S. tristichoides, S. trifaria, and S. oelandica. These species are characterized by short, cupulate or turbinate capsules widened towards the mouth, and the lack of a stem central strand. Another clade includes species with rather long, mainly ovate to cylindrical capsules and more or less developed stem central strand: S. campylopoda, S. recurvata, S. subimmersa, S. diversifolia, and S. polaris. These two clusters do not show sister relationships, but the second one appears more closely related to the Blindia clade. To resolve the apparent paraphyly, the latter phylogenetic group is segregated in a genus Blindiadelphus. In some aspects of morphology and ecology it is intermediate between Seligeria s. str. and Blindia, but differs from both genera in subquadrate upper leaf cells and thin- to moderately thick-walled rectangular exothecial cells. Molecular phylogenetic analyses revealed heterogeneity within the specimens previously referred to Blindiadelphus campylopodus, indicating a presence in Asian Russia of an undescribed species that is described here as Blindiadelphus sibiricus. It differs from B. campylopodus by the larger spores and typically rounded leaf apices. The isotype specimen of S. galinae appeared to be nearly identical to S. donniana in the sequences of ITS and trnL-F, and examination of morphology revealed no substantial differences between these species. Thus, we consider S. galinae as a synonym of S. donniana. The genus Blindiadelphus includes species of Seligeria subg. Blindiadelphus and S. subg. Cyrtoseligeria, which however are found intermingled in the molecular phylogenetic analysis. Thus the genus Blindiadelphus is accepted without any infrageneric taxa. The phylogenetic tree is congruent with the subdivision of the genus Seligeria s.str into subg. Seligeria, subg. Anodon, subg. Megalosporia and one newly established subgenus Robustidontia for S. brevifolia.</dc:description>

<citedby-count>6</citedby-count>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60110534</affiliation-url>

<affilname>Tsitsin Main Botanical Garden, Russian Academy of Sciences</affilname>

<affiliation-city>Moscow</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<affiliation-url>https://api.elsevier.com/content/affiliation/affiliation_id/60007457</affiliation-url>

<affilname>Lomonosov Moscow State University</affilname>

<affiliation-city>Moscow</affiliation-city>

<affiliation-country>Russian Federation</affiliation-country>

</affiliation>

<prism:aggregationType>Journal</prism:aggregationType>

<subtypeDescription>Article</subtypeDescription>

<author-count limit="100" total="4">4</author-count>

<author-url>https://api.elsevier.com/content/author/author_id/55856047600</author-url>

<authname>Fedosov V.E.</authname>

<surname>Fedosov</surname>

<given-name>Vladimir E.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/56996923100</author-url>

<authname>Fedorova A.V.</authname>

<surname>Fedorova</surname>

<given-name>Alina V.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/7003301657</author-url>

<authname>Ignatova E.A.</authname>

<surname>Ignatova</surname>

<given-name>Elena A.</given-name>

</author>

<author-url>https://api.elsevier.com/content/author/author_id/6603847397</author-url>

<authname>Ignatov M.S.</authname>

<surname>Ignatov</surname>

<given-name>Michael S.</given-name>

</author>

<source-id>21100209326</source-id>

<fund-acr>RSF</fund-acr>

<fund-no>14-50-00029</fund-no>

<fund-sponsor>Russian Science Foundation</fund-sponsor>

<openaccessFlag>false</openaccessFlag>

</entry>

</search-results>

3. For each record a check is made if a publication with the same metadata dc.identifier.scopus as the record does not already exist. If it does not exist, create a new workspaceItem in the dedicated collection (contained in the property scopus.importworkspaceitem.collection-id). the metadata that are inserted into the new workspaceitem are configured in the scopus-integration.xml file

The following fields must also be configured in the dspace.cfg file:

directorios.community-id : uuid of the community where to retrieve items of the type Person

scopus.importworkspaceitem.collection-id : uuid of the collection into which the workspaceitems will be placed

Rate limit

In order to avoid huge load on Scopus, it is possible to limit the maximum number of objects for which metrics must be updated at each process run. This is possible by setting either -l --limit parameter (as stated in previous paragraph) as script option or by setting the importworkspaceitem.limit in DSpace-CRIS configuration. Update process will always start importing publications for suitable researchers for which publications from Scopus have never been imported and then importing publications for researchers having the earliest date for last Scopus publications import.

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Scanning Scopus for additional publications in profiles

Rate limit