Date
Call-in Information
Time: 10:00 am, Eastern Daylight Time (New York), 4pm Central European Summer Time
To join the online meeting:
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Meeting ID: 843 7861 5572
Passcode: 556561
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Meeting ID: 843 7861 5572
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Calendar invitation - ICS file
Slack
- https://vivo-project.slack.com
- Self-register at: http://bit.ly/vivo-slack
- Self-register at: http://bit.ly/vivo-slack
Attendees
Indicating note-taker
Agenda
- Issues
- Corresponding author
- Dockerized VIVO update and vivo-home
- Docker images
- https://github.com/vivo-project/VIVO/issues/3995
- latest
- latest-release (latest stable)
- latest-demo (latest-release+sample data+test user accounts)
- Documentation on file upload
- Faculty of 1000 link
- https://github.com/vivo-project/VIVO/issues/3992
- should we wait? Preprints, self-archiving?
- Remove filegraph/validation.n3
- https://github.com/vivo-project/VIVO/issues/3993
- is that used for some purpose? how to test when remove?
- VIVO slack license
- Grants
Summer mode2nd, 9th, 23rd of July, 6th, 20th, 27th of August
- Issues
Notes
Corresponding author - https://github.com/vivo-project/VIVO/issues/3998
Dragan and Brian discussed the issue of supporting a 'corresponding author' flag in their software. Dragan raised the question of whether this feature was important to their clients and whether it should be configurable. Brian confirmed that it was a reasonable feature to include, and that it was already included in the ontology. They agreed that the feature should be supported in the platform, with the default setting being unasserted. The discussion also revealed that this feature was requested by a client (Hanover).
Dockerized VIVO update and vivo-home - https://github.com/vivo-project/VIVO/issues/3997
Georgy opened a ticket. Ivan tried to reproduce the issue. William will probably work on a fix for this.
Docker images
There is only an image at docker hub with tag latest. Dragan thinks we might consider adding latest-release (or latest-stable) and latest-demo (latest-release+sample data+test user accounts). This might be also further discussed at committers’ meeting.
Documentation on file upload - https://github.com/vivo-project/VIVO/issues/3991
Markus Kotte requested to add user documentation about uploading files in VIVO (with screenshots if possible). Dragan will work on this.
Faculty of 1000 link - https://github.com/vivo-project/VIVO/issues/3992
There is some level of uncertainty about url types which should be present in the VIVO ontology. At the moment there is a Faculty of 1000 and URL, but it might be extended in the future with preprints or self-archiving urls. However, the default URL type for the web page faux property modification page is Faculty of 1000 which is confusing. Brian thinks it would be great if we can fix this without waiting for the ontology improvements, but setting URL as the default type.
Remove filegraph/validation.n3 - https://github.com/vivo-project/VIVO/issues/3993
Dragan sought advice from Brian on potential consequences of this removal and how to investigate any unforeseen issues. Christian identified a property in the Vivo ontology code that does not exist elsewhere and is believed to be an artifact from an old ORCID integration test. Brian agreed that the property, attached to a random individual, seems to be a result of a default namespace collision and recommended removing it.
VIVO slack license
There will be a paid license for the VIVO workspace in the next 12 months enabling searching messages older than 90 days. There was some temporary issue with the license which was resolved by Lyrasis officers.
Grants
No news/open calls for grants.
Summer mode
The summer vacation mode for VIVO is over, meaning the meeting will be organized weekly, every Tuesday at 4pm. You can find the iCalendar file above.
Task List
Previous Tasks
- Dragan Ivanovic to contact Elvis regarding the issue with authentication
- Dragan Ivanovic to try to help Jinu with the installation issue
- Ian Slater will try to upgrade VIVO 1.14.0 to VIVO 1.15.0 and inform the team back in the case there is still some issue
- Dragan Ivanovic to investigate the UMLS issue and provide an update on Thursday committers' meeting.
- Bridget Almas to follow up with the Lyrasis hosting team regarding the Vivo demo site and report back. Dragan Ivanovic to investigate data which should be used in demo instance and to check how it might be part of docker.
- Victor Gabriel Pereira to explore using Elastic Search instead of Solr for VIVO's search functionality.
- Dragan Ivanovic to coordinate the VIVO 1.15.0 documentation update