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The goal of the curation system ('"CS'") is to provide a simple, extensible way to manage routine content operations on a repository. These operations are known to CS as '"tasks'", and they can operate on any DSpaceObject (i.e. subclasses of DSpaceObject) - which means the entire Site, Communities, Collections, and Items - viz. core data model objects. Tasks may elect to work on only one type of DSpace object - typically an Item - and in this case they may simply ignore other data types (tasks have the ability to '"skip' " objects for any reason). The DSpace core distribution will provide a number of useful tasks, but the system is designed to encourage local extension - tasks can be written for any purpose, and placed in any java package. This gives DSpace sites the ability to customize the behavior of their repository without having to alter - and therefore manage synchronization with - the DSpace source code. What sorts of activities are appropriate for tasks?
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For each activated task, a key-value pair is added. The key is the fully qualified class name and the value is the taskname used elsewhere to configure the use of the task, as will be seen below. Note that the curate.cfg configuration file, while in the config directory, is located under '"modules'". The intent is that tasks, as well as any configuration they require, will be optional '"add-ons' " to the basic system configuration. Adding or removing tasks has no impact on dspace.cfg.
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Second, it must implement the interface '"org.dspace.curate.CurationTask'"
The CurationTask interface is almost a '"tagging' " interface, and only requires a few very high-level methods be implemented. The most significant is:
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int perform(DSpaceObject dso); |
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Tasks are invoked using CS framework classes that manage a few details (to be described below), and this invocation can occur wherever needed, but CS offers great versatility '"out of the box'":
On the command line
A simple tool '"CurationCli' " provides access to CS via the command line. This tool bears the name '"curate' " in the DSpace launcher. For example, to perform a virus check on collection '"4'":
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[dspace]/bin/dspace curate -t vscan -i 123456789/4 |
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In the XMLUI, there are several ways to execute configured Curation Tasks:
- From the '"Curate' " tab that appears on each '"Edit Community/Collection/Item' " page: this tab allows an Administrator, Community Administrator or Collection Administrator to run a Curation Task on that particular Community, Collection or Item. When running a task on a Community or Collection, that task will also execute on all its child objects, unless the Task itself states otherwise (e.g. running a task on a Collection will also run it across all Items within that Collection).
- NOTE: Community Administrators and Collection Administrators can only run Curation Tasks on the Community or Collection which they administer, along with any child objects of that Community or Collection. For example, a Collection Administrator can run a task on that specific Collection, or on any of the Items within that Collection.
- From the Administrator's '"Curation Tasks' " page: This option is only available to DSpace Administrators, and appears in the Administrative side-menu. This page allows an Administrator to run a Curation Task across a single object, or all objects within the entire DSpace site.
- In order to run a task from this interface, you must enter in the handle for the DSpace object. To run a task site-wide, you can use the handle:
[your-handle-prefix]/0
- In order to run a task from this interface, you must enter in the handle for the DSpace object. To run a task site-wide, you can use the handle:
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When a task is selected from the drop-down list and performed, the tab displays both a phrase interpreting the '"status code' " of the task execution, and the '"result' " message if any has been defined. When the task has been queued, an acknowledgement appears instead. You may configure the words used for status codes in curate.cfg (for clarity, language localization, etc):
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The configuration of groups follows the same simple pattern as tasks, using properties in [dspace]/config/modules/curate.cfg
. The group is assigned a simple logical name, but also a localizable name that appears in the UI. For example:
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# ui.taskgroups contains the list of defined groups, together with a pretty name for UI display ui.taskgroups = \ replication = Backup and Restoration Tasks, \ integrity = Metadata Integrity Tasks, \ ..... # each group membership list is a separate property, whose value is comma-separated list of logical task names ui.taskgroup.integrity = profileformats, requiredmetadata .... |
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This attribute (which must always follow the '"name' " attribute in the flowstep element), will cause all tasks associated with the step to be placed on the queue named '"workflow' " (or any queue you wish to use, of course), and further has the effect of suspending the workflow. When the queue is emptied (meaning all tasks in it performed), then the workflow is restarted. Each workflow step may be separately configured,
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would do approximately what the command line invocation did. the method '"curate' " just performs all the tasks configured
configured (you can add multiple tasks to a curator).
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use the command-line tool, but we could also read the queue programmatically. Any number of queues can be defined and used as needed.
In the administrative UI curation '"widget'", there is the ability to both perform a task, but also place it on a queue for later processing.
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Few assumptions are made by CS about what the 'outcome' of a task may be (if any) - it. could e.g. produce a report to a temporary file, it could modify DSpace content silently, etc. But the CS runtime does provide a few pieces of information whenever a task is performed:
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This was mentioned above. This is returned to CS whenever a task is called. The complete list of values:
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-3 NOTASK - CS could not find the requested task -2 UNSET - task did not return a status code because it has not yet run -1 ERROR - task could not be performed 0 SUCCESS - task performed successfully 1 FAIL - task performed, but failed 2 SKIP - task not performed due to object not being eligible |
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The task may define a string indicating details of the outcome. This result is displayed, in the '"curation widget' " described above:
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"Virus 12312 detected on Bitstream 4 of 1234567789/3" |
CS does not interpret or assign result strings, the task does it. A task may not assign a result, but the '"best practice' " for tasks is to assign one whenever possible.
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Curator curator = new Curator(); curator.addTask("vscan").curate(coll); int status = curator.getStatus("vscan"); String result -= curator.getResult("vscan"); |
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DSpace 1.8 introduces a new '"idiom' " for tasks that require configuration data. It is available to any task whose implementation extends AbstractCurationTask
, but is completely optional. There are a number of problems that task properties are designed to solve, but to make the discussion concrete we will start with a particular one: the problem of hard-coded configuration file names. A task that relies on configuration data will typically encode a fixed reference to a configuration file name. For example, the virus scan task reads a file called '"clamav.cfg
'", which lives in [dspace]/config/modules
. And thus in the implementation one would find:
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Note that there is no name of the configuration file even mentioned, just the property name whose value we want. At runtime, the curation system resolves this call to a configuration file, and it uses the name the task has been configured as as the name of the config file. So, for example, if both were installed (in curate.cfg
) as:
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org.dspace.ctask.general.ClamAv = vscan, org.community.ctask.ConflictTask = virusscan, .... |
then '"taskProperty()
' " will resolve to [dspace]/config/modules/vscan.cfg
when called from ClamAv task, but [dspace]/config/modules/virusscan.cfg
when called from ConflictTask's code. Note that the '"vscan
' " etc are locally assigned names, so we can always prevent the '"collisions'mentioned" mentioned, and we make the tasks much more portable, since we remove the '"hard-coding' " of config names.
The entire '"API' " for task properties is:
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public String taskProperty(String name); public int taskIntProperty(String name, int defaultValue); public long taskLongProperty(String name, long defaultValue); public boolean taskBooleanProperty(String name, boolean default); |
Another use of task properties is to support multiple task profiles. Suppose we have a task that we want to operate in one of two modes. A good example would be a mediafilter task that produces a thumbnail. We can either create one if it doesn't exist, or run with '"-force' " which will create one regardless. Suppose this behavior was controlled by a property in a config file. If we configured the task as '"thumbnail'", then we would have in [dspace]/config/modules/thumbnail.cfg
:
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But an obvious use-case would be to want to run force mode and non-force mode from the admin UI on different occasions. To do this, one would have to stop Tomcat, change the property value in the config file, and restart, etc However, we can use task properties to elegantly rescue us here. All we need to do is go into the config/modules directory, and create a new file called: thumbnail.force.cfg
. In this file, we put only one property:
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Consider what happens: when we perform the task '"thumbnail
' " (using taskProperties), it reads the config file thumbnail.cfg and operates in '"non-force' " profile (since the value is false), but when we run the task '"thumbnail.force
' " the curation system first reads thumbnail.cfg
, then reads thumbnail.force.cfg
which overrides the value of the '"forceupdate
' " property. Notice that we did all this via local configuration - we have not had to touch the source code at all to obtain as many '"profiles' " as we would like.
Task Annotations
CS looks for, and will use, certain java annotations in the task Class definition that can help it invoke tasks more intelligently. An example may explain best. Since tasks operate on DSOs that can either be simple (Items) or containers (Collections, and Communities), there is a fundamental problem or ambiguity in how a task is invoked: if the DSO is a collection, should the CS invoke the task on each member of the collection, or does the task '"know' " how to do that itself? The decision is made by looking for the @Distributive annotation: if present, CS assumes that the task will manage the details, otherwise CS will walk the collection, and invoke the task on each member. The java class would be defined:
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Only a few annotation types have been defined so far, but as the number of tasks grow, we can look for common behavior that can be signaled by annotation. For example, there is a @Mutative type: that tells CS that the task may alter (mutate) the object it is working on.
Scripted Tasks
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The procedure to set up curation tasks in Jython is described on a separate page: Curation tasks in Jython |
DSpace 1.8 includes limited (and somewhat experimental) support for deploying and running tasks written in languages other than Java. Since version 6, Java has provided a standard way (API) to invoke so-called scripting or dynamic language code that runs on the java virtual machine (JVM). Scripted tasks are those written in a language accessible from this API. The exact number of supported languages will vary over time, and the degree of maturity of each language, or suitability of the language for curation tasks will also vary significantly. However, preliminary work indicates that Ruby (using the JRuby runtime) and Groovy may prove viable task languages.
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This merely defines the directory location (usually relative to the deployment base) where task script files should be kept. This directory will contain a '"catalog' " of scripted tasks named task.catalog
that contains information needed to run scripted tasks. Each task has a 'descriptor' property with value syntax:
<engine>|<relFilePath>|<implClassCtor>
An example property for a link checking task written in Ruby might be:
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This descriptor means that a '"ruby
' " script engine will be created, a script file named '"rubytask.rb
' " in the directory <script<script.
dir> dir
> will be loaded and the resolver will expect an evaluation of '"LinkChecker.new
' " will provide a correct implementation object. Note that the task must be configured in all other ways just like java tasks (in ui.tasknames, ui.taskgroups
, etc).
Script files may embed their descriptors to facilitate deployment. To accomplish this, a script must include the descriptor string with syntax:
$td=<descriptor>
somewhere on a comment line. For example:
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For reasons of portability, the <relFilePath> component may be omitted in this context. Thus, '"$td=ruby||LinkChecker.new
' " will be expanded to a descriptor with the name of the embedding file.
Interface
Scripted tasks must implement a slightly different interface than the CurationTask interface used for Java tasks. The appropriate interface for scripting tasks is ScriptedTask and has the following methods:
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public void init(Curator curator, String taskId) throws IOException; public int performDso(DSpaceObject dso) throws IOException; public int performDso(DSpaceObject dso) throws IOException; public int performId(Context ctx, String id) throws IOException; public int performId(Context ctx, String id) throws IOException; |
The difference is that ScriptedTask has separate perform methods for DSO and identifier. The reason for that is that some scripting languages (e.g. Ruby) don't support method overloading.
performDso() vs. performId()
You may have noticed that the ScriptedTask
interface has both performDso()
and performId()
methods, but only performDso is ever called when curator is launched from command line.
There are a class of use-cases in which we want to construct or create new DSOs (DSpaceObject) given an identifier in a task. In these cases, there may be no live DSO to pass to the task.
You actually can get curation system to call performId()
if you queue a task then process the queue - when reading the queue all CLI has is the handle to pass to the task.
Starter Tasks
DSpace 1.7 bundles a few tasks and activates two (2) by default to demonstrate the use of the curation system. These may be removed (deactivated by means of configuration) if desired without affecting system integrity. Each task is briefly described here.
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The profiler will operate on any DSpace object. If the object is an item, then only that item's bitstreams are profiled; if a collection, all the bitstreams of all the items; if a community, all the items of all the collections of the community.
Required Metadata
The '"requiredmetadata
' " task examines item metadata and determines whether fields that the web submission (input-forms.xml
) marks as required are present. It sets the result string to indicate either that all required fields are present, or constructs a list of metadata elements that are required but missing. When the task is performed on an item, it will display the result for that item. When performed on a collection or community, the task be performed on each item, and will display the last item result. If all items in the community or collection have all required fields, that will be the last in the collection. If the task fails for any item (i.e. the item lacks all required fields), the process is halted. This way the results for the 'failed' items are not lost.
Virus Scan
The '"vscan
' " task performs a virus scan on the bitstreams of items using the ClamAV software product.
Clam AntiVirus is an open source (GPL) anti-virus toolkit for UNIX. A port for Windows is also available. The virus scanning curation task interacts with the ClamAV virus scanning service to scan the bitstreams contained in items, reporting on infection(s). Like other curation tasks, it can be run against a container or item, in the GUI or from the command line. It should be installed according to the documentation at http://www.clamav.net. It should not be installed in the dspace installation directory. You may install it on the same machine as your dspace installation, or on another machine which has been configured properly.
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GUI (Interactive Mode) | FailFast | Expectation |
Container | T | Stop on 1st Infected Bitstream |
Container | F | Stop on 1st Infected Item |
Item | T | Stop on 1st Infected Bitstream |
Item | F | Scan all bitstreams |
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Command Line |
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Container | T | Report on 1st infected bitstream within an item/Scan all contained Items |
Container | F | Report on all infected bitstreams/Scan all contained Items |
Item | T | Report on 1st infected bitstream |
Item | F | Report on all infected bitstreams |
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