Page History

Versions Compared

Old Version 1

changes.mady.by.user Dragan Ivanovic

Saved on Aug 12, 2024

compared with

New Version Current

changes.mady.by.user Dragan Ivanovic

Saved on Aug 25, 2024

Key

This line was added.
This line was removed.
Formatting was changed.

...

Agenda

- Issues
- VIVO DataCite grant
  - https://datacite.org/global-access-fund/
  - Eligibility
  - Goal
    - harvesting data from DataCite
      - Editing Your Profile#HarvestingpublicationmetadatafromCrossrefandPubMed
    - registering new DOI by using DataCite (VIVO as DOI provider)
      - DOI Digital Object Identifier#ConfigureDSpacetousetheDataCiteAPI
- VIVO slack license
- VIVO authentication issue -
  - Corresponding author
    - - https://github.com/vivo-project/VIVO/issues/
    3996
    - Elvis has been invited to slack
  - Installation at Debian 12
    - package javax.xml.soap does not exist
      - not aligned VIVO and Vitro version
      - Dragan organized a call with Jinu
  - Solr docker upgrade - Ian Slater
  - Summer mode
    - 2nd, 9th, 23rd of July, 6th, 20th, 27th of August
Notes
Draft notes in Google Docs
Task List
Previous Tasks
- Dragan Ivanovic to contact Elvis regarding the issue with authentication
- Dragan Ivanovic to try to help Jinu with the installation issue
- Ian Slater will try to upgrade VIVO 1.14.0 to VIVO 1.15.0 and inform the team back in the case there is still some issue
- Dragan Ivanovic to investigate the UMLS issue and provide an update on Thursday committers' meeting.
- Bridget Almas to follow up with the Lyrasis hosting team regarding the Vivo demo site and report back. Dragan Ivanovic to investigate data which should be used in demo instance and to check how it might be part of docker.
- Victor Gabriel Pereira to explore using Elastic Search instead of Solr for VIVO's search functionality.
- Dragan Ivanovic to coordinate the VIVO 1.15.0 documentation update
- Ivan Mrsulja to test the Elasticsearch integration with Vivo 1.15.0 using ElasticSearch version 7.0 and provide an update on the testing process in the PR description
- Dragan Ivanovic to prepare 1.14.3 release
- Ivan Mrsulja to continue working on integration of VIVO with the ElasticSearch engine
...
- - - - 3998
    - Dockerized VIVO update and vivo-home
  - - - https://github.com/vivo-project/VIVO/issues/
  ...
  - - - 3997
      - Docker images
        https://github.com/vivo-project/VIVO/issues/
  ...
  - - - 3995
        latest
        latest-release (latest stable)
        latest-demo (latest-release+sample data+test user accounts)
      - Documentation on file upload
    - - https://github.com/vivo-project/
    ...
    - - VIVO/
    ...
    - - issues/3991
        Faculty of 1000 link
        https://github.com/vivo-project/
    ...
    - - VIVO/
    ...
    - - issues/3992
        should we wait? Preprints, self-archiving?
        Remove filegraph/validation.n3
        https://github.com/vivo-project/VIVO/issues/
    ...
    - - 3993
        is that used for some purpose? how to test when remove?
      - VIVO slack license
      - Grants
        DataCite grant
        https://datacite.org/global-access-fund/
        ORCID grant
        https://info.orcid.org/global-participation-program/global-participation-fund/
      - ~~Summer mode~~
        ~~2nd, 9th, 23rd of July, 6th, 20th, 27th of August~~
    Notes
    Corresponding author - https://github.com/vivo-project/VIVO/
    ...
    issues/3998
    Dragan and Brian discussed the issue of supporting a 'corresponding author' flag in their software. Dragan raised the question of whether this feature was important to their clients and whether it should be configurable. Brian confirmed that it was a reasonable feature to include, and that it was already included in the ontology. They agreed that the feature should be supported in the platform, with the default setting being unasserted. The discussion also revealed that this feature was requested by a client (Hanover).
    - Miloš Popović will complete PR for making wilma theme responsive
    - Ivan Mrsulja will improve messages in the CAPTCHA PR and add refresh button
    - Ivan Mrsulja to improve I forgot my password PR in accordance with discussion
    - Internationalization of I forgot my password PR
    - Georgy Litvinov to review https://github.com/vivo-project/Vitro/pull/421
    - Miloš Popović to further investigate M1 mac issue (argon update approach)
    - Miloš Popović to align Responsive Wilma theme PR with new contributions on main branch (after merging Extended search PR)
    - Ivan Mrsulja to document I forgot my password at Editing Your Profile and a flag to toggle this option at Configuration Reference
    - Georgy Litvinov to document the Extended search at Using Search
    ...
    Dockerized VIVO update and vivo-home
    - https://github.com/vivo-project/VIVO/issues/
    ...
    - https://github.com/vivo-project/VIVO/pull/3903
    ...
    - Michel Héon to share presentation slides with VIVO community via slack channel
    - Dragan Ivanovic to document publication claiming feature - Editing Your Profile#PositionsandPublications
    - Kshitij Sinha will inform Michael Bentz and other UF members about progress in resolving issue related to the long delay in logging in
    - Dragan Ivanovic will communicate further will Ceci and Rodrigo about csv import into the VIVO graph
    - Brian Lowe will complete https://github.com/vivo-project/Vitro/pull/397, Dragan Ivanovic and Georgy Litvinov will review
    - Brian Lowe will review https://github.com/vivo-project/Vitro/pull/395
    - Dragan Ivanovic will prepare RC once when all blocking issues are resolved
    - Dragan Ivanovic to discuss with VIVO committers whether we can improve VIVO WCAG compliance
    - Brian Lowe will work on implementation of https://github.com/vivo-project/VIVO/issues/3770
    - Dragan Ivanovic will increase priority of https://github.com/vivo-project/VIVO/issues/3858, and https://github.com/vivo-project/VIVO/issues/3859
    - Dragan Ivanovic will continue communication with Joseph about the issue with mass removing data via slack
    - Dragan Ivanovic to share results of discussion about using Docker images with Rodrigo via https://groups.google.com/g/vivo-tech/c/yAOHcsJg8ro (the problem might be that VIVO docker container is not seeing vivo-solr container, meaning it is a network mode issue)
    - Dragan Ivanovic to reorganize VIVO upgrade wiki pages - Upgrading VIVO
    - Maxim Prokopenko to open a ticket (bug) for Solr index directory mount with docker compose (https://github.com/vivo-project/VIVO/issues/3857)
    - All to think about priorities for further development of VIVO
    - Dragan Ivanovic to check whether PDFDocument class is needed at all (and itext dependency)
    - Dragan Ivanovic to open a ticket (github issue) for ingesting sample data memory problem
    - all
      - to provide feedback on https://docs.google.com/document/d/1jIIr90vTpI4l5KZeM30f_gOc-TpmlgKol-2oOEaU2Is/edit?usp=sharing,
      - consider participating in https://forms.gle/16QbRU62CmJCaeJp8
      - check personal calendars for the next sprint (May 22nd - June 9th, 2023)
    - Dragan Ivanovic to announce publishing VIVO 1.14.0 RC2
    - someone to test RC2
      - Ivan Mrsulja tested RC2
    - Dragan Ivanovic to create survey for collecting standard practice in VIVO deployment process
    - Dragan Ivanovic to add columns in the project board for Priority and Difficulty.
    - Sprint participants to read description of issues and think about their preferences.
    ...
    3997
    Georgy opened a ticket. Ivan tried to reproduce the issue. William will probably work on a fix for this.
    Docker images
    There is only an image at docker hub with tag latest. Dragan thinks we might consider adding latest-release (or latest-stable) and latest-demo (latest-release+sample data+test user accounts). This might be also further discussed at committers’ meeting.
    Documentation on file upload - https://github.com/vivo-project/VIVO/
    ...
    issues/3991
    Markus Kotte requested to add user documentation about uploading files in VIVO (with screenshots if possible). Dragan will work on this.
    Faculty of 1000 link - https://
    ...
    github.com/vivo-project/VIVO/
    ...
    - Georgy Litvinov to fix issues with Russian email templates
    - Georgy Litvinov to fix issues with faux data properties
    ...
    - https://github.com/vivo-project/Vitro/pull/360
    - https://github.com/vivo-project/Vitro/pull/361
    issues/3992
    There is some level of uncertainty about url types which should be present in the VIVO ontology. At the moment there is a Faculty of 1000 and URL, but it might be extended in the future with preprints or self-archiving urls. However, the default URL type for the web page faux property modification page is Faculty of 1000 which is confusing. Brian thinks it would be great if we can fix this without waiting for the ontology improvements, but setting URL as the default type.
    ...
    Remove filegraph/validation.n3 -
    https://github.com/vivo-project/VIVO/issues/
    ...
    - https://github.com/vivo-project/VIVO/issues/3698
    ...
    3993
    Dragan sought advice from Brian on potential consequences of this removal and how to investigate any unforeseen issues. Christian identified a property in the Vivo ontology code that does not exist elsewhere and is believed to be an artifact from an old ORCID integration test. Brian agreed that the property, attached to a random individual, seems to be a result of a default namespace collision and recommended removing it.
    VIVO slack license
    There will be a paid license for the VIVO workspace in the next 12 months enabling searching messages older than 90 days. There was some temporary issue with the license which was resolved by Lyrasis officers.
    Grants
    No news/open calls for grants.
    Summer mode
    The summer vacation mode for VIVO is over, meaning the meeting will be organized weekly, every Tuesday at 4pm. You can find the iCalendar file above.
    Draft notes in Google Docs
    Task List
    Previous Tasks
    - Dragan Ivanovic to contact Elvis regarding the issue with authentication
    - Dragan Ivanovic to try to help Jinu with the installation issue
    - Ian Slater will try to upgrade VIVO 1.14.0 to VIVO 1.15.0 and inform the team back in the case there is still some issue
    - Dragan Ivanovic to investigate the UMLS issue and provide an update on Thursday committers' meeting.
    - Bridget Almas to follow up with the Lyrasis hosting team regarding the Vivo demo site and report back. Dragan Ivanovic to investigate data which should be used in demo instance and to check how it might be part of docker.
    - Victor Gabriel Pereira to explore using Elastic Search instead of Solr for VIVO's search functionality.
    - Dragan Ivanovic to coordinate the VIVO 1.15.0 documentation update