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Attendees
Indicating note-taker
- Ralph O'Flinn
- Brian Lowe
- Benjamin Gross
- Alexander (Sacha) Jerabek
- Steven McCauley
- Mike Conlon
- Amin Kesharav
- Huda Khan
- Steven McCauley
- Benjamin Gross
Agenda
- Community updates
- VIVO Scholars
- Special topics for future dev calls
- In-review tickets
Jira server DuraSpace JIRA serverId c815ca92-fd23-34c2-8fe3-956808caf8c5 key VIVO-1734 Jira server DuraSpace JIRA serverId c815ca92-fd23-34c2-8fe3-956808caf8c5 key VIVO-1732 Expand Jira server DuraSpace JIRA jqlQuery filter=14416 serverId c815ca92-fd23-34c2-8fe3-956808caf8c5
- Updates from 2019-11-27 - VIVO Committers Meeting
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- Community updates:
- Ralph will do visualization part of video next Monday and that part will be added to the recording
- TAMU and Duke scholars initiatives with UI development work
- Any others?
- JavaScript front-end speaking to TPF
- https://people.metabolomics.info/person.html?iri=https%3A%2F%2Fvivo.metabolomics.info%2Findividual%2Fp197
- Clicking on dataset takes directly to metabolomics workbench
- Clicking on pubmed link goes directly to pubmed
- VIVO used as a metadata management piece with links going directly to resources linked
- NIH grant for a 0.3 developer FTE/1 hour meeting with developer and project manager
- GitHub: https://github.com/ctsit/m3c-web
- Ralph: Simple is good sometimes
- VIVO Scholars. Demoed part of the video. (http://vivo-scholar-scholar.cloud.duke.edu/ ?)
- Also review committers’ meeting notes from last week (11-27)
- Benjamin (from chat): Nice looking VIVO I haven't seen before that was shared at the German VIVO workshop: https://www.forschungskompass.eu/
- Special topics call: SDB vs TDB
- Meeting scheduled for Friday 9 AM ET
- With TDB, still addressing speed issues
- In-review tickets
- https://github.com/vivo-project/jenatools/pull/13
- https://github.com/vivo-project/VIVO-languages/pull/26
- Benjamin: Did take a look. Issue seems to be the pull request is coming in from a fork so there is more code there than
- Ralph will take a look at this
- Track user changes to the content store
- https://github.com/vivo-project/Vitro/pull/81
- Refer to committers’ discussion regarding what defines enterprise software. Proper logging/transaction tracking is one of the areas that need to be addressed.
- Can continue discussion next time
- Updating maven dependencies
- Ralph: Had to redo a bunch of those
- Also for libraries and scripts
- Based off 1.11 code base
- Requires more care
- New branch with maven dependency updates: https://github.com/vivo-project/VIVO/tree/vivo-1.11.0-lib-updates
- Benjamin: circular problem - don’t update dependencies because requires work because some are so old, leading to more work because they get even older, meaning they are even harder to update, meaning…
- Ralph has brought us part of the way but it requires more testing
- Huda: Tried to do so but seems to recall ran into errors so may have switched back to 1.10
- Ralph: There was a bug that had been released after release 1.11 (check style)
- JAVA JDK Oracle
- Cannot use newer version of OpenJDK (it shall crash during build for newer versions)
- Maven requires: oracle java jdk 8
- Also need to run off real version of build
- Mike: Usually just take artifact and documentation and follow through
- Ralph: Plug for Docker
- Brian: Would this JAVA issue affect VIVO? Ralph: yes
- https://jira.lyrasis.org/browse/VIVO-1732
- https://jira.lyrasis.org/browse/VIVO-1734
- https://jira.lyrasis.org/browse/VIVO-1545?src=confmacro
- Benjamin: Languishing ticket: https://jira.lyrasis.org/browse/VIVO-1642?src=confmacro
- Mike: Anyone tried to build Vitro 1.11?
- Benjamin: Brian, tried to use the service for starting/stopping reasoner but couldn’t get it to work so may reach out to you later.
Actions
- Organize a session on Brown's work on editing
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